Dockerfile

# syntax=docker/dockerfile:1

# tensorflow-notebook:cuda-latest installs tensorflow[and-cuda] from PyPI
FROM quay.io/jupyter/tensorflow-notebook:cuda-latest AS build

# fix: https://github.com/hadolint/hadolint/wiki/DL4006
# fix: https://github.com/koalaman/shellcheck/wiki/SC3014
SHELL ["/bin/bash", "-o", "pipefail", "-c"]

USER root

# install code-server and extensions
ENV CODE_VERSION=4.93.1
RUN wget --no-hsts -q https://github.com/coder/code-server/releases/download/v$CODE_VERSION/code-server_${CODE_VERSION}_amd64.deb && \
    dpkg -i code-server_${CODE_VERSION}_amd64.deb && \
    rm -f code-server_${CODE_VERSION}_amd64.deb && \
    code-server --force \
    --install-extension ms-python.python \
    --install-extension ms-toolsai.jupyter \
    --install-extension eamodio.gitlens \
    --install-extension gitlab.gitlab-workflow && \
    mkdir -p /usr/local/bin/start-notebook.d && \
    chown -R ${NB_USER} "/home/${NB_USER}/.config" "/home/${NB_USER}/.local" && \
    fix-permissions "/home/${NB_USER}"

# install VS Code CLI
RUN wget --no-hsts -q -O vscode_cli.tar.gz 'https://code.visualstudio.com/sha/download?build=stable&os=cli-alpine-x64' && \
    tar -xf vscode_cli.tar.gz --directory /usr/local/bin && \
    rm vscode_cli.tar.gz && \
    chown ${NB_USER} /usr/local/bin/code && \
    fix-permissions /usr/local/bin/code

# install some packages
USER ${NB_UID}
RUN mamba install --yes \
    # umap + hdbscan
    'umap-learn' \
    'hdbscan' \
    # optuna + plotly
    'optuna' \
    'plotly' \
    # optional dependencies for pandas for read_html and to support Parquet files
    'lxml' \
    'pyarrow' \
    # geopandas
    'geopandas' \
    'pysal' \
    'contextily' \
    # networkx + pyvis + netgraph
    'networkx' \
    'pyvis' \
    'netgraph' \
    # dependencies for gymnasium, install before gymnasium!
    'swig' \
    'moviepy' \
    # dependencies for jupyter-vscode-proxy (?)
    'rfc3339-validator' \
    'rfc3986-validator' \
    'uri-template' \
    'fqdn' \
    'webcolors' \
    'isoduration' \
    'jsonpointer' \
    # provide a way for lecturers to share code
    'nbgitpuller' \
    # monitor GPUs in terminal
    'nvtop' \
    # integration of VS Code in JupyterLab
    'jupyter-server-proxy' \
    'jupyter-vscode-proxy' \