feat: global conda installation; local conda env

src/makefile/basic.mk

@@ -5,8 +5,8 @@ SERVER_USER := mmustermann
 SERVER_HOST := hyrican-1-extern
 
 ## Python Environment
-CONDA_PATH := ~/.local/opt/conda
-CONDA_ENV := ml
+CONDA_PATH := /opt/conda
+CONDA_ENV := ~/envs/ml
 PYTHON_VERSION := 3.10
 PYTHON_PACKAGES := tensorflow-cpu ipympl mypy jupyter pystan \
 	matplotlib seaborn scikit-learn openpyxl odfpy pyarrow \
@@ -28,13 +28,14 @@ REMOTE_PROJECT_DIR := ~/my_project
 REMOTE_OUTPUT_FILES := output/*
 
 ## Misc
-COPY_LINKS_AS_FILES ?= false
+COPY_LINKS_AS_FILES := false
 
 # ---
 
 LOGIN := $(SERVER_USER)@$(SERVER_HOST)
 SSH := ssh $(LOGIN)
 RSYNC := rsync --archive --compress --progress $(if $(filter true,$(COPY_LINKS_AS_FILES)),--copy-links)
+MAMBA := source $(CONDA_PATH)/etc/profile.d/conda.sh && mamba # TODO: mamba.sh
 CONDA := source $(CONDA_PATH)/etc/profile.d/conda.sh && conda
 
 .PHONY: install upload run kill log download delete
@@ -44,7 +45,7 @@ help: # list targets and usage
 
 install: # install conda environment
 	$(SSH) '\
-		$(CONDA) create -n $(CONDA_ENV) python=$(PYTHON_VERSION) $(PYTHON_PACKAGES)\
+		$(MAMBA) create -p $(CONDA_ENV) python=$(PYTHON_VERSION) $(PYTHON_PACKAGES)\
 	'
 
 upload: # upload project files from client to server
@@ -53,7 +54,7 @@ upload: # upload project files from client to server
 run: # execute main script on server
 	$(SSH) '\
 		cd $(REMOTE_PROJECT_DIR);\
-		$(CONDA) activate $(CONDA_ENV);\
+		$(CONDA) activate -p $(CONDA_ENV);\
 		python $(MAIN_SCRIPT);\
 		$(CONDA) deactivate;\
 	'

src/makefile/makefile

-# Configuration
-
-## Server
-SERVER_USER := mmustermann
-SERVER_HOST := hyrican-1-extern
-
-## Python Environment
-CONDA_PATH := ~/.local/opt/conda
-CONDA_ENV := ml
-PYTHON_VERSION := 3.10
-PYTHON_PACKAGES := tensorflow-cpu ipympl mypy jupyter pystan \
-	matplotlib seaborn scikit-learn openpyxl odfpy pyarrow \
-	geopandas descartes pyogrio optuna plotly tqdm spyder \
-	jax-jumpy moviepy shimmy-atari gymnasium-box2d \
-	ipywidgets notebook lxml fastparquet zstandard \
-	contextily networkx pyvis netgraph pip
-
-## Project Files
-MAIN_SCRIPT := main.py
-LOG_FILE := progress.log
-
-## Local Project Paths
-LOCAL_PROJECT_DIR := .
-LOCAL_OUTPUT_DIR := output
-
-## Remote Project Paths
-REMOTE_PROJECT_DIR := ~/my_project
-REMOTE_OUTPUT_FILES := output/*
-
-## Misc
-COPY_LINKS_AS_FILES ?= false
-
-# ---
-
-LOGIN := $(SERVER_USER)@$(SERVER_HOST)
-SSH := ssh $(LOGIN)
-RSYNC := rsync --archive --compress --progress $(if $(filter true,$(COPY_LINKS_AS_FILES)),--copy-links)
-CONDA := source $(CONDA_PATH)/etc/profile.d/conda.sh && conda
-
-.PHONY: install upload run kill log download delete
-
-help: # list targets and usage
-	@awk '/^[a-zA-Z0-9_-]+:/{print $1}' makefile
-
-install: # install conda environment
-	$(SSH) '\
-		$(CONDA) create -n $(CONDA_ENV) python=$(PYTHON_VERSION) $(PYTHON_PACKAGES)\
-	'
-
-upload: # upload project files from client to server
-	$(RSYNC) $(LOCAL_PROJECT_DIR)/ $(LOGIN):$(REMOTE_PROJECT_DIR)
-
-run: # execute main script on server
-	$(SSH) '\
-		cd $(REMOTE_PROJECT_DIR);\
-		$(CONDA) activate $(CONDA_ENV);\
-		python $(MAIN_SCRIPT);\
-		$(CONDA) deactivate;\
-	'
-
-kill: # terminate the running script on the server
-	$(SSH) '\
-		pkill -f $(MAIN_SCRIPT)\
-	'
-
-log: # show the last lines of the log file
-	$(SSH) '\
-		cd $(REMOTE_PROJECT_DIR) && tail -f $(LOG_FILE)\
-	'
-
-download: # download output files from server to client
-	$(RSYNC) $(LOGIN):$(REMOTE_PROJECT_DIR)/$(REMOTE_OUTPUT_FILES) $(LOCAL_PROJECT_DIR)/$(LOCAL_OUTPUT_DIR)
-
-delete: # remove/delete all project files on server
-	$(SSH) '\
-		rm -rf $(REMOTE_PROJECT_DIR)\
-	'